Variant report

Variant	rs1328145
Chromosome Location	chr9:73394053-73394054
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780965	0.85[ASN][1000 genomes]
rs12003443	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328144	0.88[ASN][1000 genomes]
rs1328146	0.88[ASN][1000 genomes]
rs17055748	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055804	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55843997	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543770	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543771	0.80[EUR][1000 genomes]
rs62543772	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544536	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544538	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560153	0.85[ASN][1000 genomes]
rs72727779	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727795	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73375600-73398400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73390600-73399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:73392000-73404600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73393800-73394800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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