Variant report

Variant	rs12003978
Chromosome Location	chr9:8208825-8208826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10976851	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12003166	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288225	0.95[ASN][1000 genomes]
rs1538522	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1937784	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067545	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2185233	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34519761	0.96[EUR][1000 genomes]
rs34840552	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022320	chr9:8163549-8216832	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv892222	chr9:8172046-8253019	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12003978	RLN2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8205200-8210400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:8206600-8209000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:8206600-8209600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:8207800-8209000	Enhancers	Osteobl	bone
5	chr9:8208000-8210600	Weak transcription	Aorta	Aorta
6	chr9:8208800-8209200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:8208800-8209200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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