Variant report

Variant	rs2185233
Chromosome Location	chr9:8208014-8208015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10976851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003166	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12003978	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12343942	0.93[AFR][1000 genomes]
rs13288225	0.86[ASN][1000 genomes]
rs1538522	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937784	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2067545	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34519761	0.99[EUR][1000 genomes]
rs34840552	0.85[ASN][1000 genomes]
rs73415932	0.82[AFR][1000 genomes]
rs73415933	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022320	chr9:8163549-8216832	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv892222	chr9:8172046-8253019	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2185233	RLN2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8205200-8208200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:8205200-8210400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:8206600-8209000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:8206600-8209600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:8207600-8208200	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:8207800-8209000	Enhancers	Osteobl	bone
7	chr9:8208000-8210600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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