Variant report

Variant	rs12004509
Chromosome Location	chr9:9856544-9856545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10759094	1.00[JPT][hapmap]
rs11793032	0.82[YRI][hapmap]
rs1323794	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13288990	1.00[JPT][hapmap]
rs1408131	1.00[JPT][hapmap]
rs1746813	1.00[JPT][hapmap]
rs2761741	1.00[JPT][hapmap]
rs2821519	0.86[ASN][1000 genomes]
rs2821520	1.00[JPT][hapmap]
rs2821523	1.00[JPT][hapmap]
rs2821524	1.00[JPT][hapmap]
rs34133378	0.88[ASN][1000 genomes]
rs62533719	0.84[ASN][1000 genomes]
rs62533720	0.88[ASN][1000 genomes]
rs62533721	0.88[ASN][1000 genomes]
rs6477422	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7033762	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7037028	0.84[ASN][1000 genomes]
rs7863526	0.86[ASN][1000 genomes]
rs912357	1.00[JPT][hapmap]
rs9299101	0.80[ASN][1000 genomes]
rs9408796	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs973916	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829906	chr9:9737201-9897866	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2753179	chr9:9778653-9861006	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019399	chr9:9780915-9942126	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv471276	chr9:9785685-9863227	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv892277	chr9:9785685-9882950	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1018814	chr9:9793285-9957301	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv466139	chr9:9793342-9858060	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613326	chr9:9793342-9858060	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv892287	chr9:9794545-9869714	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv892288	chr9:9794545-9882950	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv613332	chr9:9798092-9869714	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv466142	chr9:9801907-9858060	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv613337	chr9:9801907-9858060	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	nsv613338	chr9:9801907-9859571	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
18	nsv892292	chr9:9802458-9869714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
19	nsv466143	chr9:9803954-9858060	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
20	nsv613343	chr9:9803954-9858060	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv466144	chr9:9803954-9860735	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
22	nsv613344	chr9:9803954-9860735	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv613346	chr9:9804718-9858060	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv466146	chr9:9816955-9858060	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv613350	chr9:9816955-9858060	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
26	nsv613351	chr9:9816955-9859571	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
27	nsv1019920	chr9:9817031-9925880	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv539984	chr9:9817031-9925880	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1025723	chr9:9817231-9950917	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv539985	chr9:9817231-9950917	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv613352	chr9:9829018-9859571	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
32	nsv613353	chr9:9829018-9860735	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
33	nsv613354	chr9:9829018-9882950	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
34	nsv892293	chr9:9832245-9893002	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
35	nsv892294	chr9:9832245-9898870	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
36	nsv892295	chr9:9832245-10380406	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv1022172	chr9:9841432-9975529	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv1029136	chr9:9847852-9863465	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
39	nsv1015187	chr9:9847852-9944268	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv892296	chr9:9852100-9937753	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9855600-9857400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:9855600-9861000	Weak transcription	Dnd41	blood
3	chr9:9856200-9860800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:9856200-9862400	Weak transcription	Fetal Thymus	thymus

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