Variant report

Variant	rs12005021
Chromosome Location	chr9:73869088-73869089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10868991	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10868995	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10868997	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142711	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11142717	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11142736	0.84[EUR][1000 genomes]
rs11142750	0.87[EUR][1000 genomes]
rs11142753	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142763	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11142773	0.86[EUR][1000 genomes]
rs11142774	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142777	0.81[EUR][1000 genomes]
rs11142778	0.81[EUR][1000 genomes]
rs12378604	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12379392	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12380581	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1504404	0.87[EUR][1000 genomes]
rs17056425	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17056483	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17616798	0.87[EUR][1000 genomes]
rs2174308	0.85[EUR][1000 genomes]
rs4079469	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7018911	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7021834	0.86[EUR][1000 genomes]
rs7027219	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7039341	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7040929	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043726	0.86[EUR][1000 genomes]
rs73467746	0.84[EUR][1000 genomes]
rs73469317	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73469327	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73647995	0.86[EUR][1000 genomes]
rs73647997	0.86[ASN][1000 genomes]
rs73647998	0.86[ASN][1000 genomes]
rs73648000	0.86[ASN][1000 genomes]
rs73648001	0.86[ASN][1000 genomes]
rs73649703	0.86[ASN][1000 genomes]
rs73649705	0.86[ASN][1000 genomes]
rs73649709	0.83[ASN][1000 genomes]
rs763359	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7848661	0.86[EUR][1000 genomes]
rs7854330	0.81[EUR][1000 genomes]
rs7870153	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9785216	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9785312	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs985654	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73866000-73869200	Weak transcription	Liver	Liver

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