Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10868995	0.86[ASN][1000 genomes]
rs10868997	0.86[ASN][1000 genomes]
rs11142753	0.86[ASN][1000 genomes]
rs11142774	0.86[ASN][1000 genomes]
rs11142784	0.89[AFR][1000 genomes]
rs12005021	0.83[ASN][1000 genomes]
rs12378604	0.86[ASN][1000 genomes]
rs12379392	0.86[ASN][1000 genomes]
rs12380818	0.82[AFR][1000 genomes]
rs7027219	0.82[ASN][1000 genomes]
rs7040929	0.86[ASN][1000 genomes]
rs73469327	0.86[ASN][1000 genomes]
rs73647997	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73647998	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73648000	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73648001	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73649703	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73649705	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73649708	0.96[AFR][1000 genomes]
rs73649710	1.00[AFR][1000 genomes]
rs9785312	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471311	chr9:73902148-73916953	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73901600-73906800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:73904000-73906800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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