Variant report

Variant	rs12005490
Chromosome Location	chr9:110241361-110241362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10117763	1.00[CEU][hapmap]
rs10816519	1.00[CEU][hapmap]
rs10978813	1.00[CEU][hapmap]
rs10978814	1.00[CEU][hapmap]
rs10978817	1.00[CEU][hapmap]
rs11788360	1.00[CEU][hapmap]
rs11792359	1.00[CEU][hapmap]
rs11794295	1.00[CEU][hapmap]
rs12336189	1.00[CEU][hapmap]
rs12336214	1.00[CEU][hapmap]
rs7024696	1.00[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110235600-110247600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:110235800-110248400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:110236000-110248400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:110240600-110243000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110241000-110241400	Weak transcription	Stomach Mucosa	stomach
6	chr9:110241000-110241800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:110241000-110242600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110241200-110241400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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