Variant report

Variant	rs11792359
Chromosome Location	chr9:110256977-110256978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10117763	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10816519	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10978813	1.00[CEU][hapmap]
rs10978814	1.00[CEU][hapmap]
rs10978817	1.00[CEU][hapmap]
rs11788360	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11793219	1.00[EUR][1000 genomes]
rs11794295	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11795298	1.00[EUR][1000 genomes]
rs12005490	1.00[CEU][hapmap]
rs12335657	1.00[EUR][1000 genomes]
rs12336189	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12336214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12340310	1.00[EUR][1000 genomes]
rs12340462	1.00[EUR][1000 genomes]
rs12345785	1.00[EUR][1000 genomes]
rs12351651	1.00[EUR][1000 genomes]
rs12352260	0.94[EUR][1000 genomes]
rs12353064	1.00[EUR][1000 genomes]
rs34651589	1.00[EUR][1000 genomes]
rs7024696	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110254000-110257400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:110255200-110259400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110255400-110264600	Weak transcription	A549	lung
4	chr9:110256400-110257000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:110256400-110257000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:110256600-110259800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:110256800-110257000	Enhancers	Stomach Mucosa	stomach
8	chr9:110256800-110257600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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