Variant report

Variant	rs34651589
Chromosome Location	chr9:110250186-110250187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110247849..110250590-chr9:111329415..111332131,3	MCF-7	breast:
2	chr19:10764627..10765503-chr9:110250012..110250853,2	Hela-S3	cervix:
3	chr9:110248541..110250333-chr9:110285200..110286705,2	MCF-7	breast:
4	chr9:110190788..110193642-chr9:110249721..110252458,4	MCF-7	breast:
5	chr9:110184199..110185540-chr9:110249535..110250385,9	MCF-7	breast:
6	chr9:110248220..110250527-chr9:111302470..111304423,3	MCF-7	breast:
7	chr9:109425556..109427280-chr9:110248781..110250709,2	MCF-7	breast:
8	chr6:27114514..27116900-chr9:110249066..110251372,2	MCF-7	breast:
9	chr9:110248605..110250352-chr9:110763897..110765598,2	MCF-7	breast:
10	chr9:110189538..110195123-chr9:110249494..110254933,10	MCF-7	breast:
11	chr9:110246769..110253919-chr9:110298442..110306182,20	MCF-7	breast:
12	chr9:110248818..110250564-chr9:110802870..110804460,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234229	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000226825	Chromatin interaction
ENSG00000227350	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000129351	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117763	0.88[EUR][1000 genomes]
rs10816519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792359	1.00[EUR][1000 genomes]
rs11793219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11795298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12345785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12351651	1.00[EUR][1000 genomes]
rs12352260	0.94[EUR][1000 genomes]
rs12353064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv825028	chr9:110248596-110252543	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110244000-110250400	Weak transcription	HSMMtube	muscle
2	chr9:110246200-110253800	Active TSS	Right Atrium	heart
3	chr9:110247000-110250600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:110247200-110250400	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
5	chr9:110247200-110250600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:110247200-110250800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110247200-110254000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr9:110247400-110251400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
9	chr9:110247400-110253800	Active TSS	Psoas Muscle	Psoas
10	chr9:110247600-110250400	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
11	chr9:110247600-110250600	Active TSS	Brain Hippocampus Middle	brain
12	chr9:110247600-110250600	Active TSS	Small Intestine	intestine
13	chr9:110247600-110250600	Transcr. at gene 5' and 3'	NHLF	lung
14	chr9:110248000-110250800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:110248200-110250400	Weak transcription	Aorta	Aorta
16	chr9:110248400-110254200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr9:110248600-110250800	Transcr. at gene 5' and 3'	Sigmoid Colon	Sigmoid Colon
18	chr9:110248600-110252800	Active TSS	Brain Cingulate Gyrus	brain
19	chr9:110248800-110250200	Transcr. at gene 5' and 3'	Rectal Smooth Muscle	rectum
20	chr9:110249000-110250200	Transcr. at gene 5' and 3'	Ovary	ovary
21	chr9:110249000-110250400	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:110249000-110250800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
23	chr9:110249000-110251000	Transcr. at gene 5' and 3'	Esophagus	oesophagus
24	chr9:110249000-110251000	Transcr. at gene 5' and 3'	Lung	lung
25	chr9:110249000-110251000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
26	chr9:110249000-110251600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr9:110249000-110251800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr9:110249000-110251800	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
29	chr9:110249000-110251800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr9:110249000-110252600	Active TSS	Osteobl	bone
31	chr9:110249000-110253200	Active TSS	Brain Substantia Nigra	brain
32	chr9:110249000-110253800	Active TSS	Brain Anterior Caudate	brain
33	chr9:110249200-110250200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
34	chr9:110249200-110250200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:110249200-110250200	Transcr. at gene 5' and 3'	Spleen	Spleen
36	chr9:110249200-110251200	Transcr. at gene 5' and 3'	Gastric	stomach
37	chr9:110249200-110251400	Bivalent/Poised TSS	Fetal Kidney	kidney
38	chr9:110249200-110251600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr9:110249200-110251600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
40	chr9:110249200-110253000	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr9:110249200-110253400	Active TSS	Brain Angular Gyrus	brain
42	chr9:110249200-110254200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr9:110249400-110250200	Transcr. at gene 5' and 3'	Left Ventricle	heart
44	chr9:110249400-110250400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
45	chr9:110249400-110250400	Active TSS	Liver	Liver
46	chr9:110249400-110250600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
47	chr9:110249400-110250600	Flanking Active TSS	HMEC	breast
48	chr9:110249400-110250800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
49	chr9:110249400-110251000	Bivalent/Poised TSS	Thymus	Thymus
50	chr9:110249400-110251200	Bivalent Enhancer	Fetal Brain Male	brain

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