Variant report

Variant	rs12005618
Chromosome Location	chr9:72879304-72879305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72877983..72879807-chr9:72885567..72887477,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7857663	1.00[ASW][hapmap];0.92[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72879400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:72875200-72901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:72875400-72879400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:72875400-72906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:72875800-72884200	Weak transcription	Lung	lung
7	chr9:72876000-72879800	Weak transcription	Left Ventricle	heart
8	chr9:72876000-72882400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:72876000-72882400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr9:72876000-72883200	Strong transcription	Placenta	Placenta
11	chr9:72876000-72887600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:72876000-72898200	Weak transcription	Fetal Brain Male	brain
13	chr9:72876000-72906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:72876200-72880200	Strong transcription	Primary hematopoietic stem cells	blood
15	chr9:72876400-72879400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:72876400-72879600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:72876400-72879800	Weak transcription	Pancreas	Pancrea
18	chr9:72876400-72880400	Strong transcription	Fetal Intestine Large	intestine
19	chr9:72876400-72884200	Weak transcription	Esophagus	oesophagus
20	chr9:72876400-72884200	Weak transcription	Fetal Stomach	stomach
21	chr9:72876400-72886200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:72876400-72886600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr9:72876400-72889200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
25	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
26	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
28	chr9:72876600-72879400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:72876600-72879400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:72876600-72885800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:72876600-72888200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:72876800-72900200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:72877000-72886000	Strong transcription	Fetal Thymus	thymus
34	chr9:72877000-72895400	Weak transcription	Right Ventricle	heart
35	chr9:72877000-72904800	Weak transcription	Brain Germinal Matrix	brain
36	chr9:72877000-72939800	Weak transcription	Gastric	stomach
37	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:72877200-72879400	Enhancers	Pancreatic Islets	Pancreatic Islet
39	chr9:72877400-72885200	Strong transcription	Primary B cells from cord blood	blood
40	chr9:72877600-72883200	Strong transcription	A549	lung
41	chr9:72877600-72909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:72877800-72879400	Weak transcription	Brain Substantia Nigra	brain
44	chr9:72877800-72880000	Genic enhancers	Dnd41	blood
45	chr9:72877800-72880000	Weak transcription	HepG2	liver
46	chr9:72877800-72880800	Strong transcription	K562	blood
47	chr9:72877800-72884200	Weak transcription	Thymus	Thymus
48	chr9:72877800-72887200	Weak transcription	Aorta	Aorta
49	chr9:72877800-72888000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:72877800-72892000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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