Variant report

Variant	rs1200577
Chromosome Location	chr6:70916073-70916074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10498871	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1200569	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1200576	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1210977	0.84[EUR][1000 genomes]
rs12663063	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868632	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2296006	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2296007	0.80[EUR][1000 genomes]
rs2346212	0.90[EUR][1000 genomes]
rs3806058	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4707687	0.90[EUR][1000 genomes]
rs550152	0.83[EUR][1000 genomes]
rs555313	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs572716	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58042167	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs583618	0.89[EUR][1000 genomes]
rs583619	0.81[EUR][1000 genomes]
rs58673424	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs622918	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62421668	0.86[EUR][1000 genomes]
rs62421670	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs624243	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7756657	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs809074	0.80[EUR][1000 genomes]
rs9454995	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70875600-70919800	Weak transcription	GM12878-XiMat	blood
2	chr6:70909400-70917800	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70912800-70917600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:70912800-70917800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:70914400-70917600	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links