Variant report

Variant	rs7756657
Chromosome Location	chr6:70872851-70872852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70861054..70863597-chr6:70870424..70874641,3	K562	blood:
2	chr6:70867487..70869606-chr6:70872055..70875188,3	K562	blood:
3	chr6:70872579..70876213-chr6:70878847..70881996,3	K562	blood:
4	chr6:70868106..70871581-chr6:70871760..70875101,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10498871	0.81[ASW][hapmap];0.95[CEU][hapmap];0.84[LWK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1200569	0.95[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1200576	0.81[ASW][hapmap];0.95[CEU][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1200577	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1210977	0.84[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs12663063	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868588	0.82[YRI][hapmap]
rs16868632	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296006	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296007	0.93[EUR][1000 genomes]
rs2346212	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs3793056	0.84[CEU][hapmap];0.85[MEX][hapmap]
rs3806036	0.89[CEU][hapmap]
rs3806058	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828773	0.89[CEU][hapmap]
rs3828775	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4707687	0.82[EUR][1000 genomes]
rs550152	0.85[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs555313	0.81[ASW][hapmap];0.95[CEU][hapmap];0.90[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs572716	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58042167	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs583618	0.83[EUR][1000 genomes]
rs583619	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs58673424	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58701153	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs622918	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62420159	0.87[EUR][1000 genomes]
rs62421668	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421670	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624243	1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs633762	0.92[MEX][hapmap]
rs658805	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs7765390	0.83[EUR][1000 genomes]
rs809074	0.93[EUR][1000 genomes]
rs9454995	0.95[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7756657	C6orf57	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70842400-70875200	Weak transcription	GM12878-XiMat	blood
2	chr6:70847600-70874800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70856200-70899400	Weak transcription	Left Ventricle	heart
4	chr6:70871400-70876000	Weak transcription	Fetal Lung	lung
5	chr6:70871800-70873000	Enhancers	K562	blood
6	chr6:70872200-70873000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:70872800-70873400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:70872800-70876200	Weak transcription	Fetal Kidney	kidney

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