Variant report

Variant	rs7765390
Chromosome Location	chr6:70934968-70934969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498871	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs1200569	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1200576	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1210977	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12663063	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16868632	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2296006	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs3806058	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs555313	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs572716	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58042167	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58673424	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs622918	0.82[EUR][1000 genomes]
rs62421668	0.83[EUR][1000 genomes]
rs62421670	0.85[EUR][1000 genomes]
rs624243	0.94[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs633762	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7756657	0.83[EUR][1000 genomes]
rs9454995	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70931400-70961400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:70932400-70938000	Weak transcription	Fetal Brain Female	brain
3	chr6:70932600-70951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:70933000-70951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:70933600-70947800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:70934400-70935600	Enhancers	Brain Hippocampus Middle	brain
7	chr6:70934400-70951600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:70934800-70935000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:70934800-70935000	Enhancers	Gastric	stomach
10	chr6:70934800-70935200	Enhancers	Brain Angular Gyrus	brain
11	chr6:70934800-70935200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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