Variant report

Variant	rs1200644
Chromosome Location	chr11:104657058-104657059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10895725	0.82[EUR][1000 genomes]
rs10895726	0.85[EUR][1000 genomes]
rs10895727	0.85[EUR][1000 genomes]
rs11226478	0.82[EUR][1000 genomes]
rs11226487	0.84[EUR][1000 genomes]
rs11226489	0.84[EUR][1000 genomes]
rs1147027	0.83[EUR][1000 genomes]
rs1147028	0.83[EUR][1000 genomes]
rs1147030	0.84[EUR][1000 genomes]
rs1147035	0.80[ASN][1000 genomes]
rs1147036	0.86[ASN][1000 genomes]
rs1147037	0.86[ASN][1000 genomes]
rs1147040	0.86[ASN][1000 genomes]
rs1147042	0.88[ASN][1000 genomes]
rs1147046	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1147047	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147051	0.87[ASN][1000 genomes]
rs1200639	0.88[ASN][1000 genomes]
rs1200640	0.88[ASN][1000 genomes]
rs1200641	0.88[ASN][1000 genomes]
rs1200648	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1200649	0.86[ASN][1000 genomes]
rs1200656	0.86[ASN][1000 genomes]
rs1201819	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944539	0.83[EUR][1000 genomes]
rs2845897	0.86[ASN][1000 genomes]
rs4755048	0.83[EUR][1000 genomes]
rs4755049	0.83[EUR][1000 genomes]
rs7122441	0.83[EUR][1000 genomes]
rs7130311	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7926917	0.81[ASN][1000 genomes]
rs985406	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104655800-104668600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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