Variant report

Variant	rs1147027
Chromosome Location	chr11:104604262-104604263
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10128735	0.83[ASN][1000 genomes]
rs10791723	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10791724	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10791725	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791726	0.85[ASN][1000 genomes]
rs10895716	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10895718	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10895723	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10895725	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895726	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895727	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226465	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226470	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226473	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226477	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226478	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226487	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226489	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147028	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147030	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147035	0.80[ASN][1000 genomes]
rs1147046	0.90[EUR][1000 genomes]
rs1147047	0.90[EUR][1000 genomes]
rs1200644	0.83[EUR][1000 genomes]
rs1200648	0.90[EUR][1000 genomes]
rs1200653	0.85[ASN][1000 genomes]
rs1201819	0.89[EUR][1000 genomes]
rs12270999	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12271078	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12272453	0.83[ASN][1000 genomes]
rs12280706	0.83[ASN][1000 genomes]
rs12293362	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12788324	0.83[ASN][1000 genomes]
rs12796922	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12803940	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365393	0.85[ASN][1000 genomes]
rs1426550	0.83[ASN][1000 genomes]
rs1426551	0.83[ASN][1000 genomes]
rs1426552	0.83[ASN][1000 genomes]
rs1426553	0.83[ASN][1000 genomes]
rs1834631	0.83[ASN][1000 genomes]
rs1892927	0.83[ASN][1000 genomes]
rs1893462	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1893463	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1942504	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1942517	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1942519	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1944525	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944526	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944539	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2000730	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2052752	0.83[ASN][1000 genomes]
rs2105710	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2155161	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2187130	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2850820	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34185315	0.83[ASN][1000 genomes]
rs34462521	0.83[ASN][1000 genomes]
rs35625119	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35835077	0.83[ASN][1000 genomes]
rs4393279	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4466799	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4494280	0.83[ASN][1000 genomes]
rs4584548	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4619123	0.83[ASN][1000 genomes]
rs4755048	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755049	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60489722	0.83[ASN][1000 genomes]
rs6591092	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6591093	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7109427	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7122441	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123412	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7130311	0.90[EUR][1000 genomes]
rs7925694	0.83[ASN][1000 genomes]
rs7926917	0.82[ASN][1000 genomes]
rs7938134	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942166	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945330	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs985406	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1147027	CASP4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104603200-104607200	Weak transcription	Dnd41	blood
2	chr11:104603600-104607400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links