Variant report

Variant	rs12271078
Chromosome Location	chr11:104576576-104576577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10791723	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10791724	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10791725	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895716	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895718	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10895723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895725	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895726	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10895727	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11226465	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226470	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226477	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226478	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226487	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226489	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147027	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147028	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1147030	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12270999	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12293362	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796922	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12803940	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1893462	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893463	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1942504	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942517	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1942519	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1944525	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944526	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944539	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2000730	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155161	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187130	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2850820	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35625119	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393279	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4466799	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4584548	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755048	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755049	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591092	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6591093	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109427	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7122441	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123412	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7942166	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104572000-104576600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:104572000-104576800	Weak transcription	NHLF	lung
3	chr11:104575200-104576800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr11:104575400-104576600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:104575400-104576600	Enhancers	Adipose Nuclei	Adipose
6	chr11:104575400-104577000	Flanking Active TSS	Dnd41	blood
7	chr11:104575400-104577400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr11:104575600-104576600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:104575600-104576600	Enhancers	Fetal Stomach	stomach
10	chr11:104575600-104576800	Enhancers	Fetal Thymus	thymus
11	chr11:104575600-104577200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr11:104575800-104576600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr11:104575800-104576800	Flanking Active TSS	HUVEC	blood vessel
14	chr11:104575800-104577200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:104575800-104577200	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr11:104576000-104576600	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:104576000-104576800	Enhancers	Brain Hippocampus Middle	brain
18	chr11:104576000-104576800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr11:104576200-104576600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:104576200-104576800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:104576200-104576800	Flanking Active TSS	Primary B cells from peripheral blood	blood
22	chr11:104576200-104576800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr11:104576200-104577000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:104576200-104577000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:104576200-104577200	Active TSS	Primary T cells fromperipheralblood	blood
26	chr11:104576200-104577200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:104576200-104577200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:104576200-104577200	Enhancers	Fetal Lung	lung
29	chr11:104576200-104577200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr11:104576200-104577600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:104576400-104576600	Active TSS	Primary B cells from cord blood	blood
33	chr11:104576400-104576600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:104576400-104576600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr11:104576400-104576600	Active TSS	Thymus	Thymus
36	chr11:104576400-104576800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:104576400-104576800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr11:104576400-104576800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr11:104576400-104576800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr11:104576400-104576800	Active TSS	Duodenum Mucosa	Duodenum
41	chr11:104576400-104576800	Active TSS	GM12878-XiMat	blood
42	chr11:104576400-104576800	Enhancers	NH-A	brain
43	chr11:104576400-104577000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr11:104576400-104577000	Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr11:104576400-104577000	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr11:104576400-104577000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:104576400-104577000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr11:104576400-104577000	Enhancers	Brain Anterior Caudate	brain
49	chr11:104576400-104577200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:104576400-104578800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links