Variant report

Variant	rs12008800
Chromosome Location	chrX:103942766-103942767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1041873	1.00[YRI][hapmap]
rs16985102	1.00[YRI][hapmap]
rs16985118	1.00[YRI][hapmap]
rs17003887	1.00[YRI][hapmap]
rs1894445	1.00[YRI][hapmap]
rs7060170	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:103941200-103943000	Enhancers	Primary B cells from peripheral blood	blood
2	chrX:103941400-103943000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chrX:103942200-103942800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chrX:103942400-103942800	Enhancers	GM12878-XiMat	blood
5	chrX:103942600-103942800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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