Variant report

Variant	rs16985102
Chromosome Location	chrX:103924005-103924006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1041873	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12008800	1.00[YRI][hapmap]
rs1343415	0.89[LWK][hapmap]
rs16985118	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17003887	0.85[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1894445	0.85[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7060170	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916408	chrX:103552340-104347979	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:103922400-103924600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chrX:103922600-103925000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chrX:103923000-103925200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chrX:103923600-103924600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chrX:103923800-103924200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chrX:103923800-103924400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chrX:103923800-103925000	Enhancers	H9 Cell Line	embryonic stem cell
8	chrX:103923800-103925200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chrX:103923800-103925200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chrX:103924000-103924800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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