Variant report

Variant	rs1200920
Chromosome Location	chr10:37390504-37390505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1148257	0.80[ASN][1000 genomes]
rs1711245	0.82[ASN][1000 genomes]
rs2459444	0.80[ASN][1000 genomes]
rs2486110	1.00[ASN][1000 genomes]
rs2486111	0.98[ASN][1000 genomes]
rs2486116	0.82[ASN][1000 genomes]
rs2486117	0.84[ASN][1000 genomes]
rs2505139	0.84[ASN][1000 genomes]
rs2505140	0.83[ASN][1000 genomes]
rs2505141	0.85[ASN][1000 genomes]
rs2505144	1.00[ASN][1000 genomes]
rs2944452	0.88[ASN][1000 genomes]
rs9664406	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036571	chr10:37172804-37396508	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1054192	chr10:37298828-37396508	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv6398	chr10:37363206-37394313	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv947845	chr10:37386444-37411634	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37390000-37391400	Enhancers	A549	lung
2	chr10:37390400-37391000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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