Variant report

Variant	rs12011576
Chromosome Location	chrX:109652382-109652383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:109645406..109647609-chrX:109650068..109652618,2	K562	blood:
2	chrX:109409548..109411510-chrX:109651321..109653948,2	MCF-7	breast:
3	chrX:109415002..109419479-chrX:109644619..109652883,12	MCF-7	breast:
4	chrX:109405106..109407983-chrX:109651863..109654237,3	K562	blood:
5	chrX:109644001..109647691-chrX:109648578..109653644,9	MCF-7	breast:
6	chrX:109560137..109562194-chrX:109651735..109654266,2	MCF-7	breast:
7	chrX:109524077..109526589-chrX:109651737..109654452,2	K562	blood:
8	chrX:109403582..109404331-chrX:109652334..109653056,2	MCF-7	breast:
9	chrX:109415544..109418339-chrX:109649973..109652520,2	MCF-7	breast:
10	chrX:109245100..109247263-chrX:109648958..109652509,3	K562	blood:
11	chrX:109555533..109557231-chrX:109650764..109653060,2	K562	blood:
12	chrX:109244719..109247263-chrX:109648958..109653525,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157600	Chromatin interaction
ENSG00000101935	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7884321	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109641400-109656200	Weak transcription	Esophagus	oesophagus
2	chrX:109646800-109652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chrX:109646800-109652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chrX:109646800-109653000	Weak transcription	A549	lung
5	chrX:109646800-109653800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chrX:109646800-109656200	Weak transcription	Right Atrium	heart
7	chrX:109647000-109652600	Weak transcription	NHDF-Ad	bronchial
8	chrX:109647200-109652600	Weak transcription	NHLF	lung
9	chrX:109647200-109653000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chrX:109647600-109652800	Weak transcription	NH-A	brain
11	chrX:109647600-109653000	Weak transcription	HSMMtube	muscle
12	chrX:109648800-109653000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chrX:109649000-109661800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chrX:109649400-109653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chrX:109649400-109656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chrX:109650000-109652400	Enhancers	K562	blood
17	chrX:109650800-109652600	Weak transcription	NHEK	skin
18	chrX:109651200-109653600	Enhancers	HSMM	muscle
19	chrX:109651200-109655800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chrX:109651400-109652800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chrX:109651400-109652800	Weak transcription	HMEC	breast
22	chrX:109651600-109652600	Weak transcription	Hela-S3	cervix
23	chrX:109651600-109652800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chrX:109651600-109656200	Weak transcription	Placenta	Placenta
25	chrX:109652200-109654400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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