Variant report

Variant	rs7884321
Chromosome Location	chrX:109494748-109494749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:109490242..109492590-chrX:109492971..109495424,2	K562	blood:
2	chrX:109494287..109496789-chrX:109562104..109564475,2	MCF-7	breast:
3	chrX:109492249..109494982-chrX:109558775..109561286,2	MCF-7	breast:
4	chrX:109493449..109497246-chrX:109497514..109500530,3	K562	blood:
5	chrX:109493054..109495474-chrX:109668665..109670740,2	K562	blood:

Variant related genes	Relation type
ENSG00000101935	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12011576	1.00[LWK][hapmap]
rs16985977	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv7036	chrX:109484702-109529468	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109486000-109501400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chrX:109487600-109494800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:109488600-109495200	Weak transcription	Primary T cells from cord blood	blood
4	chrX:109489200-109496200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chrX:109490000-109496200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chrX:109490000-109499800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chrX:109490400-109497200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chrX:109490400-109502200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chrX:109490600-109498600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chrX:109490600-109499000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chrX:109490800-109498600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chrX:109490800-109501200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chrX:109492400-109498400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chrX:109492600-109497400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chrX:109492800-109496200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chrX:109493400-109495200	Enhancers	K562	blood
17	chrX:109494000-109495000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chrX:109494200-109495000	Bivalent Enhancer	Fetal Lung	lung
19	chrX:109494200-109495200	Enhancers	NHEK	skin
20	chrX:109494600-109494800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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