Variant report

Variant	rs12012241
Chromosome Location	chrX:138288570-138288571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138210555..138212279-chrX:138288161..138290124,2	MCF-7	breast:
2	chrX:138287750..138289322-chrX:138289477..138291268,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11095775	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs5976308	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7066638	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3346694	chrX:138283686-138289084	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138283000-138288600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:138284600-138288600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chrX:138284600-138288800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chrX:138284600-138288800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chrX:138284800-138288600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chrX:138285200-138288600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chrX:138286400-138288600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chrX:138287000-138288800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chrX:138287600-138288800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chrX:138287800-138293800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chrX:138287800-138294000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:138288000-138293800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chrX:138288200-138288600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
14	chrX:138288200-138288600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chrX:138288400-138288600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chrX:138288400-138288600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chrX:138288400-138288600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chrX:138288400-138288600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chrX:138288400-138288600	Bivalent Enhancer	Liver	Liver
20	chrX:138288400-138288600	Bivalent Enhancer	Fetal Brain Female	brain
21	chrX:138288400-138288600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chrX:138288400-138288600	Flanking Active TSS	K562	blood
23	chrX:138288400-138288800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
24	chrX:138288400-138288800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links