Variant report

Variant	rs5976308
Chromosome Location	chrX:138293418-138293419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11095775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs12012241	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6418808	0.91[YRI][hapmap]
rs6528600	0.91[YRI][hapmap]
rs6654363	0.91[YRI][hapmap]
rs7066638	1.00[CEU][hapmap]
rs7471425	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv533984	chrX:137938683-138556308	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv532935	chrX:138281469-138764448	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138287800-138293800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chrX:138287800-138294000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:138288000-138293800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chrX:138290600-138293800	Enhancers	K562	blood
5	chrX:138291000-138294600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chrX:138292600-138293800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chrX:138292800-138294000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chrX:138293000-138293600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:138293000-138294000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chrX:138293200-138293800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chrX:138293200-138293800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chrX:138293400-138293800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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