Variant report

Variant	rs12018987
Chromosome Location	chr14:25456900-25456901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25452953..25454512-chr14:25455893..25457917,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10133967	0.83[AMR][1000 genomes]
rs10138896	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10148708	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848412	0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109507	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1952493	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630402	0.83[AMR][1000 genomes]
rs61561953	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73595342	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:25430000-25465800	Weak transcription	Lung	lung
3	chr14:25451800-25470200	Weak transcription	HSMMtube	muscle
4	chr14:25452200-25459000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:25452800-25470000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:25454800-25457200	Strong transcription	HepG2	liver
7	chr14:25454800-25457800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:25454800-25463000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:25455000-25457600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:25455000-25462400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:25455000-25470200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:25455200-25457800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:25455200-25461200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:25455400-25457200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:25455400-25457200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr14:25455600-25458800	Weak transcription	Placenta	Placenta
17	chr14:25455800-25457000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:25455800-25457000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:25455800-25457800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:25455800-25458200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:25455800-25458800	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:25455800-25459000	Weak transcription	Adipose Nuclei	Adipose
23	chr14:25455800-25460200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr14:25455800-25461000	Weak transcription	Right Ventricle	heart
25	chr14:25455800-25462400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr14:25455800-25463000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:25455800-25464400	Weak transcription	Brain Substantia Nigra	brain
28	chr14:25456000-25457800	Weak transcription	Fetal Intestine Small	intestine
29	chr14:25456000-25458800	Weak transcription	Left Ventricle	heart
30	chr14:25456000-25460000	Weak transcription	Fetal Heart	heart
31	chr14:25456000-25461000	Weak transcription	Right Atrium	heart
32	chr14:25456000-25461800	Weak transcription	Gastric	stomach
33	chr14:25456000-25462200	Weak transcription	Brain Hippocampus Middle	brain
34	chr14:25456000-25462800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr14:25456000-25472800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:25456200-25458800	Weak transcription	Fetal Lung	lung
37	chr14:25456200-25460600	Weak transcription	Stomach Mucosa	stomach
38	chr14:25456400-25457800	Strong transcription	HSMM	muscle
39	chr14:25456400-25466200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:25456400-25472800	Weak transcription	Brain Angular Gyrus	brain
41	chr14:25456600-25458200	Strong transcription	Fetal Intestine Large	intestine
42	chr14:25456600-25461400	Weak transcription	Brain Anterior Caudate	brain
43	chr14:25456800-25458800	Weak transcription	Pancreas	Pancrea
44	chr14:25456800-25459600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr14:25456800-25459800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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