Variant report

Variant	rs17109507
Chromosome Location	chr14:25501134-25501135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10133967	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138896	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148708	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11848412	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12018987	0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1952493	0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28554072	0.91[AFR][1000 genomes]
rs28565426	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28630402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61561953	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73595342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25479400-25508600	Weak transcription	Brain Anterior Caudate	brain
2	chr14:25481200-25507400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:25485200-25501600	Weak transcription	Fetal Intestine Small	intestine
4	chr14:25488000-25505000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:25490600-25501400	Weak transcription	Pancreas	Pancrea
6	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
7	chr14:25495400-25507400	Weak transcription	Fetal Lung	lung
8	chr14:25495800-25502400	Weak transcription	Stomach Mucosa	stomach
9	chr14:25496600-25501600	Weak transcription	GM12878-XiMat	blood
10	chr14:25497200-25515200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:25499800-25504600	Weak transcription	Right Ventricle	heart
12	chr14:25501000-25501800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr14:25501000-25502000	Enhancers	Left Ventricle	heart
14	chr14:25501000-25502000	Flanking Active TSS	HepG2	liver
15	chr14:25501000-25502200	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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