Variant report

Variant	rs12022150
Chromosome Location	chr1:169631923-169631924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12025263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026586	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028786	0.83[AMR][1000 genomes]
rs12029120	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044233	1.00[ASN][1000 genomes]
rs28775413	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917651	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917696	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917699	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917703	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917705	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917707	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917714	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917715	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917717	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917721	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670223	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6125	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179450	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169618600-169633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:169626800-169636800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:169629200-169636200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:169629800-169636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:169631000-169632000	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:169631400-169632000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr1:169631400-169632000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr1:169631400-169632000	Enhancers	Dnd41	blood
9	chr1:169631400-169632200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:169631600-169632200	Active TSS	K562	blood
11	chr1:169631600-169632600	Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr1:169631800-169632000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr1:169631800-169632000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:169631800-169632200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr1:169631800-169632600	Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr1:169631800-169636000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:169631800-169636800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links