Variant report

Variant	rs55670223
Chromosome Location	chr1:169646331-169646332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12022150	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025263	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12026586	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12028783	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12029120	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12044233	1.00[ASN][1000 genomes]
rs28775413	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917651	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917696	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917699	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917703	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917705	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917707	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917714	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917715	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917717	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917721	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161951	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6125	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179450	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169644000-169649000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:169644600-169651600	Enhancers	Primary B cells from cord blood	blood
3	chr1:169644800-169646400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr1:169644800-169646800	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:169644800-169647000	Enhancers	Dnd41	blood
6	chr1:169644800-169647200	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:169644800-169647400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:169645000-169646800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:169645000-169646800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:169645000-169647000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:169645000-169647200	Enhancers	Primary T cells from cord blood	blood
12	chr1:169645000-169647200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:169645000-169647400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:169645000-169651600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:169645000-169652200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:169645200-169646800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:169645200-169646800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:169645200-169646800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:169645200-169649400	Enhancers	GM12878-XiMat	blood
20	chr1:169645600-169646800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:169645600-169647000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr1:169645600-169650200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:169646000-169646800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr1:169646000-169648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:169646200-169646600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr1:169646200-169650000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links