Variant report

Variant	rs12022699
Chromosome Location	chr1:212117205-212117206
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212117014..212118681-chr1:212119464..212122299,2	K562	blood:
2	chr1:212105969..212108114-chr1:212115797..212117969,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10494948	0.81[MEX][hapmap]
rs11119837	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12022627	1.00[CHB][hapmap]
rs12023599	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12040681	1.00[CHB][hapmap]
rs12402869	0.88[AMR][1000 genomes]
rs17699706	0.85[AMR][1000 genomes]
rs17718437	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61828529	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7518073	0.82[YRI][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212102600-212120400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:212103000-212132600	Weak transcription	Gastric	stomach
3	chr1:212103600-212132200	Weak transcription	Esophagus	oesophagus
4	chr1:212103800-212132200	Weak transcription	NHLF	lung
5	chr1:212104000-212117600	Weak transcription	HepG2	liver
6	chr1:212104800-212124400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:212106200-212148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:212106400-212132400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:212106400-212132600	Weak transcription	Right Ventricle	heart
10	chr1:212106400-212147800	Weak transcription	NH-A	brain
11	chr1:212107000-212118000	Weak transcription	HSMMtube	muscle
12	chr1:212107000-212132800	Weak transcription	Pancreas	Pancrea
13	chr1:212108000-212132400	Weak transcription	Spleen	Spleen
14	chr1:212108400-212117800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:212109200-212118000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:212109200-212118000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:212109200-212118400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:212109200-212132800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:212111200-212118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:212112000-212132200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:212112000-212170200	Weak transcription	Small Intestine	intestine
22	chr1:212112200-212124600	Weak transcription	Aorta	Aorta
23	chr1:212112400-212117600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:212112400-212118000	Weak transcription	Fetal Heart	heart
25	chr1:212112400-212132200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:212112400-212132800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:212112400-212133000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:212112400-212148600	Weak transcription	NHDF-Ad	bronchial
29	chr1:212112600-212117800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:212112600-212118000	Weak transcription	Stomach Mucosa	stomach
31	chr1:212112600-212118600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr1:212112600-212120800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:212112600-212132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:212112600-212133600	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:212112600-212148200	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:212113200-212117600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:212113200-212118400	Strong transcription	K562	blood
39	chr1:212113400-212122400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr1:212113400-212126600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:212113600-212122600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:212113600-212122600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:212113600-212125000	Weak transcription	Brain Anterior Caudate	brain
44	chr1:212113600-212138600	Weak transcription	Fetal Kidney	kidney
45	chr1:212113600-212151600	Weak transcription	Psoas Muscle	Psoas
46	chr1:212113600-212170200	Weak transcription	Fetal Brain Male	brain
47	chr1:212113800-212121000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:212113800-212122800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr1:212114000-212120600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr1:212114200-212185800	Weak transcription	Brain Angular Gyrus	brain

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