Variant report

Variant	rs7518073
Chromosome Location	chr1:212076117-212076118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12022699	0.82[YRI][hapmap]
rs12023599	1.00[YRI][hapmap]
rs17718437	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212074400-212078400	Enhancers	Fetal Intestine Small	intestine
2	chr1:212074400-212078800	Enhancers	Fetal Intestine Large	intestine
3	chr1:212074600-212076200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212074600-212077200	ZNF genes & repeats	GM12878-XiMat	blood
5	chr1:212074800-212076200	Enhancers	Esophagus	oesophagus
6	chr1:212075600-212076200	Enhancers	Colonic Mucosa	Colon
7	chr1:212075600-212076800	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:212075600-212077000	Enhancers	Liver	Liver
9	chr1:212075800-212076200	Enhancers	Pancreas	Pancrea
10	chr1:212075800-212076600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:212076000-212076200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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