Variant report

Variant	rs12023242
Chromosome Location	chr1:159084022-159084023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1002408	1.00[ASN][1000 genomes]
rs10489846	1.00[ASN][1000 genomes]
rs12025915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047874	1.00[ASN][1000 genomes]
rs16841709	1.00[ASN][1000 genomes]
rs4233417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73023751	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159083400-159084200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:159083400-159084200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:159083400-159084200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:159083400-159084200	Enhancers	Adipose Nuclei	Adipose
5	chr1:159083400-159084200	Enhancers	Brain Angular Gyrus	brain
6	chr1:159083400-159084200	Enhancers	NHEK	skin
7	chr1:159083400-159084400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:159083400-159084600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:159083600-159084200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:159083600-159084200	Enhancers	HMEC	breast
11	chr1:159083800-159084200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:159084000-159084200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:159084000-159084200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:159084000-159084200	Flanking Active TSS	Brain Substantia Nigra	brain
15	chr1:159084000-159084400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:159084000-159084400	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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