Variant report

Variant	rs4233417
Chromosome Location	chr1:159084368-159084369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1002408	1.00[ASN][1000 genomes]
rs10489846	1.00[ASN][1000 genomes]
rs12023242	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12025915	1.00[ASN][1000 genomes]
rs12047874	1.00[ASN][1000 genomes]
rs12124161	0.95[EUR][1000 genomes]
rs12131851	0.95[EUR][1000 genomes]
rs16841709	1.00[ASN][1000 genomes]
rs703154	0.84[CEU][hapmap]
rs73023751	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159083400-159084400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:159083400-159084600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:159084000-159084400	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr1:159084000-159084400	Enhancers	Spleen	Spleen
5	chr1:159084200-159084400	Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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