Variant report

Variant	rs703154
Chromosome Location	chr1:159116801-159116802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4233417	0.84[CEU][hapmap]
rs703153	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs863029	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs863033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs863034	0.97[EUR][1000 genomes]
rs863037	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs863038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs863040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs703154	SNORA42	cis	parietal	SCAN
rs703154	UBE2Q1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159112600-159132800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:159116200-159118200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:159116400-159117400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:159116400-159117600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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