Variant report

Variant	rs863029
Chromosome Location	chr1:159107819-159107820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2814778	1.00[LWK][hapmap]
rs3027012	1.00[LWK][hapmap]
rs4233417	0.92[CEU][hapmap]
rs6676002	1.00[LWK][hapmap]
rs703153	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs703154	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs863002	1.00[LWK][hapmap]
rs863028	0.90[EUR][1000 genomes]
rs863033	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs863034	0.80[EUR][1000 genomes]
rs863037	0.80[AMR][1000 genomes]
rs863038	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs863040	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs863029	SNORA42	cis	parietal	SCAN
rs863029	KIAA0907	cis	parietal	SCAN
rs863029	UBE2Q1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159104400-159110200	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links