Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10921055	0.84[EUR][1000 genomes]
rs10921056	0.84[EUR][1000 genomes]
rs10921080	0.91[ASN][1000 genomes]
rs12022478	0.84[EUR][1000 genomes]
rs12022579	0.91[ASN][1000 genomes]
rs12028978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12030963	0.83[ASN][1000 genomes]
rs12031703	0.92[ASN][1000 genomes]
rs12032256	0.91[ASN][1000 genomes]
rs12040119	0.83[ASN][1000 genomes]
rs12040934	0.83[EUR][1000 genomes]
rs12042596	0.91[ASN][1000 genomes]
rs12045881	0.93[ASN][1000 genomes]
rs12046491	0.93[ASN][1000 genomes]
rs12047006	0.89[ASN][1000 genomes]
rs12047650	0.91[ASN][1000 genomes]
rs12049117	0.92[ASN][1000 genomes]
rs12067233	0.93[ASN][1000 genomes]
rs16834026	0.93[ASN][1000 genomes]
rs4129792	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4131006	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4316340	0.83[ASN][1000 genomes]
rs73057180	0.83[EUR][1000 genomes]
rs73057183	0.81[EUR][1000 genomes]
rs73057185	0.84[EUR][1000 genomes]
rs73057191	0.84[EUR][1000 genomes]
rs73057198	0.83[EUR][1000 genomes]
rs73059235	0.80[EUR][1000 genomes]
rs7416226	0.93[ASN][1000 genomes]
rs7416935	0.83[EUR][1000 genomes]
rs7417000	0.84[EUR][1000 genomes]
rs7520725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv548648	chr1:192001465-192096277	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192092800-192101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:192094200-192096400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:192094200-192096800	Enhancers	Dnd41	blood
4	chr1:192094400-192096600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:192095000-192096200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:192095200-192096200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:192095200-192096200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr1:192095200-192096400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:192095800-192096200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:192095800-192102400	Weak transcription	HUVEC	blood vessel

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