Variant report

Variant	rs4131006
Chromosome Location	chr1:192098679-192098680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10921080	0.86[ASN][1000 genomes]
rs12022579	0.86[ASN][1000 genomes]
rs12024380	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12028978	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12031703	0.91[ASN][1000 genomes]
rs12032256	0.87[ASN][1000 genomes]
rs12042596	0.87[ASN][1000 genomes]
rs12045881	0.88[ASN][1000 genomes]
rs12046491	0.88[ASN][1000 genomes]
rs12047006	0.85[ASN][1000 genomes]
rs12047650	0.87[ASN][1000 genomes]
rs12049117	0.91[ASN][1000 genomes]
rs12067233	0.89[ASN][1000 genomes]
rs16834026	0.88[ASN][1000 genomes]
rs4129792	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4129793	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7416226	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv430047	chr1:191811587-192203678	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192092800-192101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:192095800-192102400	Weak transcription	HUVEC	blood vessel
3	chr1:192096200-192099000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:192096800-192098800	Weak transcription	Dnd41	blood
5	chr1:192098600-192099000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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