Variant report

Variant	rs12026649
Chromosome Location	chr1:161134498-161134499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161100027..161102916-chr1:161132751..161137101,5	K562	blood:
2	chr1:161133675..161135632-chr20:45893847..45895708,2	MCF-7	breast:
3	chr1:161132643..161135301-chr20:48598507..48600192,2	MCF-7	breast:
4	chr1:161133737..161136347-chr1:161193972..161196200,2	K562	blood:

Variant related genes	Relation type
ENSG00000158882	Chromatin interaction
ENSG00000124216	Chromatin interaction
ENSG00000158796	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11265559	1.00[CHD][hapmap]
rs12066302	1.00[ASN][1000 genomes]
rs2307414	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161129800-161135400	Weak transcription	Aorta	Aorta
2	chr1:161130000-161135600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:161130200-161135000	Weak transcription	Psoas Muscle	Psoas
4	chr1:161130200-161135200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:161130400-161135000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:161130400-161135000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:161130400-161135000	Weak transcription	Right Atrium	heart
8	chr1:161130400-161135000	Strong transcription	NHLF	lung
9	chr1:161130600-161134800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:161130600-161134800	Strong transcription	NHEK	skin
11	chr1:161130600-161135000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:161130600-161135200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:161130600-161135200	Strong transcription	Thymus	Thymus
14	chr1:161130800-161134600	Genic enhancers	Dnd41	blood
15	chr1:161130800-161134800	Strong transcription	Fetal Thymus	thymus
16	chr1:161130800-161134800	Strong transcription	HUVEC	blood vessel
17	chr1:161130800-161135000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:161130800-161135000	Strong transcription	A549	lung
19	chr1:161130800-161135200	Strong transcription	Osteobl	bone
20	chr1:161131000-161134800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr1:161131000-161134800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:161131000-161134800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:161131200-161134800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:161131200-161134800	Strong transcription	Brain Anterior Caudate	brain
25	chr1:161131200-161134800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:161131200-161135000	Strong transcription	Fetal Lung	lung
27	chr1:161131200-161135200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:161131200-161135400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:161131400-161134600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:161131400-161134800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:161131400-161134800	Strong transcription	Primary T cells from cord blood	blood
32	chr1:161131400-161134800	Strong transcription	Adipose Nuclei	Adipose
33	chr1:161131400-161135000	Weak transcription	Stomach Mucosa	stomach
34	chr1:161131400-161135000	Strong transcription	HMEC	breast
35	chr1:161131600-161134600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:161131600-161134600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:161131600-161134800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:161131600-161134800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:161131600-161134800	Strong transcription	HSMM	muscle
40	chr1:161131800-161134600	Strong transcription	Colon Smooth Muscle	Colon
41	chr1:161131800-161134600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr1:161131800-161134600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:161131800-161134800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:161131800-161134800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:161131800-161134800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr1:161131800-161134800	Strong transcription	Liver	Liver
47	chr1:161131800-161134800	Strong transcription	Brain Angular Gyrus	brain
48	chr1:161131800-161134800	Strong transcription	Brain Hippocampus Middle	brain
49	chr1:161131800-161134800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr1:161131800-161134800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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