Variant report

Variant	rs12066302
Chromosome Location	chr1:161079040-161079041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161075634..161077899-chr1:161078357..161080663,3	K562	blood:
2	chr1:161078634..161080529-chr1:161082210..161084019,2	MCF-7	breast:
3	chr1:161078747..161080431-chr1:161130246..161132439,2	K562	blood:
4	chr1:161074952..161077702-chr1:161078357..161080682,3	K562	blood:
5	chr1:161072059..161074491-chr1:161076266..161079145,2	K562	blood:
6	chr1:161015658..161017292-chr1:161078510..161080446,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158773	Chromatin interaction
ENSG00000143258	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12026649	1.00[ASN][1000 genomes]
rs3813615	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161068400-161081800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:161068600-161081200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:161068800-161085200	Weak transcription	Right Atrium	heart
4	chr1:161068800-161085600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:161068800-161087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:161069000-161083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:161069000-161085200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:161069000-161086800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:161069200-161086400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:161069400-161086400	Weak transcription	Stomach Mucosa	stomach
11	chr1:161071000-161085000	Weak transcription	Small Intestine	intestine
12	chr1:161071800-161081000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:161072000-161084000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:161072000-161086200	Weak transcription	Fetal Kidney	kidney
15	chr1:161072000-161086400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:161072000-161086400	Weak transcription	Fetal Lung	lung
17	chr1:161072200-161079400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:161072200-161079400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:161072200-161079400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:161072200-161079400	Weak transcription	Lung	lung
21	chr1:161072200-161079400	Weak transcription	Pancreas	Pancrea
22	chr1:161072200-161079400	Weak transcription	Psoas Muscle	Psoas
23	chr1:161072200-161081000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:161072200-161081000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:161072200-161081200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr1:161072200-161081800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:161072200-161081800	Weak transcription	Fetal Heart	heart
28	chr1:161072200-161082000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr1:161072200-161083000	Weak transcription	HSMM	muscle
30	chr1:161072200-161083200	Weak transcription	Brain Angular Gyrus	brain
31	chr1:161072200-161083400	Weak transcription	Brain Anterior Caudate	brain
32	chr1:161072200-161084200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:161072200-161085200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:161072200-161085200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:161072200-161085200	Weak transcription	Colon Smooth Muscle	Colon
36	chr1:161072200-161085200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:161072200-161085200	Weak transcription	Right Ventricle	heart
38	chr1:161072200-161085200	Weak transcription	NHDF-Ad	bronchial
39	chr1:161072200-161086000	Weak transcription	Ovary	ovary
40	chr1:161072200-161086200	Weak transcription	Aorta	Aorta
41	chr1:161072200-161086400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:161072200-161086400	Weak transcription	Fetal Brain Male	brain
43	chr1:161072200-161086400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:161072200-161086800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr1:161072200-161087000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr1:161072200-161087000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:161072400-161079400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:161072400-161079400	Weak transcription	Fetal Intestine Small	intestine
49	chr1:161072400-161079400	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:161072400-161079400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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