Variant report

Variant	rs12027718
Chromosome Location	chr1:79836598-79836599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11811462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12021904	0.83[ASN][1000 genomes]
rs12023367	0.91[ASN][1000 genomes]
rs12030013	0.91[ASN][1000 genomes]
rs12034665	0.83[ASN][1000 genomes]
rs12036905	0.83[ASN][1000 genomes]
rs12039488	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12039867	0.83[ASN][1000 genomes]
rs12039923	0.83[ASN][1000 genomes]
rs12040033	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040237	0.83[ASN][1000 genomes]
rs12040880	0.83[ASN][1000 genomes]
rs12041180	0.83[ASN][1000 genomes]
rs12042159	0.83[ASN][1000 genomes]
rs12043955	0.83[ASN][1000 genomes]
rs12044515	0.83[ASN][1000 genomes]
rs12044896	0.83[ASN][1000 genomes]
rs12044901	0.83[ASN][1000 genomes]
rs12045663	0.83[ASN][1000 genomes]
rs12045991	0.83[ASN][1000 genomes]
rs12046726	0.83[ASN][1000 genomes]
rs12047490	0.82[CHB][hapmap]
rs12047951	0.83[ASN][1000 genomes]
rs12048746	0.83[ASN][1000 genomes]
rs12049068	0.83[ASN][1000 genomes]
rs17103209	0.83[ASN][1000 genomes]
rs17103224	0.83[ASN][1000 genomes]
rs17103273	0.83[ASN][1000 genomes]
rs2088103	0.83[ASN][1000 genomes]
rs2132054	0.83[ASN][1000 genomes]
rs3000134	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3000143	0.83[ASN][1000 genomes]
rs3000144	0.83[ASN][1000 genomes]
rs3000145	0.83[ASN][1000 genomes]
rs3000146	0.83[ASN][1000 genomes]
rs3000157	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3015018	0.83[ASN][1000 genomes]
rs3015069	1.00[ASN][1000 genomes]
rs9425165	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830337	chr1:79791879-79913241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546633	chr1:79794719-79877035	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv462150	chr1:79835066-79873161	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv546634	chr1:79835066-79873161	Weak transcription Enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv462161	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv462173	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv470721	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv546635	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79831200-79836800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:79835400-79839200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links