Variant report

Variant	rs12029607
Chromosome Location	chr1:56446105-56446106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10888949	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206703	0.95[AFR][1000 genomes]
rs11206709	0.88[AFR][1000 genomes]
rs11206711	0.94[AFR][1000 genomes]
rs11206730	0.84[ASN][1000 genomes]
rs11206737	0.82[ASN][1000 genomes]
rs59749317	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56441400-56446200	Weak transcription	Osteobl	bone
3	chr1:56441400-56446400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:56441600-56446800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:56442600-56446200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56445600-56447400	Enhancers	Hela-S3	cervix
7	chr1:56445800-56447800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56446000-56447400	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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