Variant report

Variant	rs11206709
Chromosome Location	chr1:56448410-56448411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10489773	0.80[ASN][1000 genomes]
rs10888949	0.96[AFR][1000 genomes]
rs11206699	1.00[ASN][1000 genomes]
rs11206703	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11206704	1.00[ASN][1000 genomes]
rs11206710	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206711	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206733	0.85[ASN][1000 genomes]
rs12029607	0.88[AFR][1000 genomes]
rs12072872	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12072883	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12074486	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075636	1.00[ASN][1000 genomes]
rs12077930	0.89[ASN][1000 genomes]
rs12080296	0.80[ASN][1000 genomes]
rs12117303	0.85[ASN][1000 genomes]
rs12123596	0.80[ASN][1000 genomes]
rs1591010	0.80[ASN][1000 genomes]
rs17403236	0.89[ASN][1000 genomes]
rs4927288	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4927300	0.85[ASN][1000 genomes]
rs4927301	0.85[ASN][1000 genomes]
rs59536199	0.85[ASN][1000 genomes]
rs59749317	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61210945	1.00[ASN][1000 genomes]
rs61772134	0.85[ASN][1000 genomes]
rs61772138	0.85[ASN][1000 genomes]
rs6668403	1.00[ASN][1000 genomes]
rs7512228	0.85[ASN][1000 genomes]
rs7515479	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7526008	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543532	0.80[ASN][1000 genomes]
rs7544293	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11206709	PPAP2B	cis	parietal	SCAN
rs11206709	C1orf168	cis	parietal	SCAN
rs11206709	GPX7	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56447200-56452400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:56447400-56453200	Weak transcription	NHDF-Ad	bronchial
4	chr1:56447800-56451400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56447800-56451400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56447800-56451400	Weak transcription	Fetal Lung	lung
7	chr1:56447800-56451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56448400-56453200	Weak transcription	Psoas Muscle	Psoas

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