Variant report

Variant	rs6668403
Chromosome Location	chr1:56440461-56440462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489773	0.80[ASN][1000 genomes]
rs11206699	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206703	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206704	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206709	1.00[ASN][1000 genomes]
rs11206710	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206711	1.00[ASN][1000 genomes]
rs11206733	0.85[ASN][1000 genomes]
rs12072872	0.89[ASN][1000 genomes]
rs12072883	0.89[ASN][1000 genomes]
rs12074486	1.00[ASN][1000 genomes]
rs12075636	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077930	0.89[ASN][1000 genomes]
rs12080296	0.80[ASN][1000 genomes]
rs12117303	0.85[ASN][1000 genomes]
rs12123596	0.80[ASN][1000 genomes]
rs1591010	0.80[ASN][1000 genomes]
rs17403236	0.89[ASN][1000 genomes]
rs4927288	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4927300	0.85[ASN][1000 genomes]
rs4927301	0.85[ASN][1000 genomes]
rs59536199	0.85[ASN][1000 genomes]
rs59749317	1.00[ASN][1000 genomes]
rs61210945	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772134	0.85[ASN][1000 genomes]
rs61772138	0.85[ASN][1000 genomes]
rs7512228	0.85[ASN][1000 genomes]
rs7515479	1.00[ASN][1000 genomes]
rs7526008	0.89[ASN][1000 genomes]
rs7543532	0.80[ASN][1000 genomes]
rs7544293	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56425800-56441000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:56437600-56441000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56438200-56441000	Weak transcription	Aorta	Aorta
4	chr1:56438200-56441600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56439000-56441400	Enhancers	NHLF	lung
6	chr1:56439200-56441400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:56439600-56441200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:56439600-56441400	Enhancers	HSMM	muscle
9	chr1:56439600-56441600	Enhancers	HSMMtube	muscle
10	chr1:56439800-56440600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:56439800-56440800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:56439800-56441000	Enhancers	Colon Smooth Muscle	Colon
13	chr1:56439800-56441000	Enhancers	Osteobl	bone
14	chr1:56439800-56441200	Enhancers	Adipose Nuclei	Adipose
15	chr1:56439800-56441200	Enhancers	Fetal Stomach	stomach
16	chr1:56439800-56441200	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:56439800-56441400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:56440000-56440800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:56440000-56441400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:56440000-56441400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:56440000-56441400	Enhancers	Hela-S3	cervix
22	chr1:56440000-56451400	Weak transcription	Ovary	ovary
23	chr1:56440400-56440600	Flanking Active TSS	Fetal Lung	lung
24	chr1:56440400-56441200	Enhancers	NH-A	brain
25	chr1:56440400-56441600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:56440400-56441600	Enhancers	NHDF-Ad	bronchial

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