Variant report

Variant	rs7512228
Chromosome Location	chr1:56574395-56574396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489773	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206699	0.85[ASN][1000 genomes]
rs11206703	0.81[ASN][1000 genomes]
rs11206704	0.85[ASN][1000 genomes]
rs11206709	0.85[ASN][1000 genomes]
rs11206710	0.85[ASN][1000 genomes]
rs11206711	0.85[ASN][1000 genomes]
rs11206733	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072872	0.96[ASN][1000 genomes]
rs12072883	0.96[ASN][1000 genomes]
rs12074486	0.85[ASN][1000 genomes]
rs12075636	0.85[ASN][1000 genomes]
rs12077930	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12080296	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12117303	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123596	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132426	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12140284	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12141880	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408150	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408597	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410703	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1591010	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927288	0.81[ASN][1000 genomes]
rs4927300	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927301	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927305	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59536199	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59749317	0.85[ASN][1000 genomes]
rs61210945	0.85[ASN][1000 genomes]
rs61772132	0.97[EUR][1000 genomes]
rs61772134	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772138	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773369	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6588607	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6668403	0.85[ASN][1000 genomes]
rs6682819	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6695004	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7515479	0.85[ASN][1000 genomes]
rs7526008	0.96[ASN][1000 genomes]
rs7543532	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7544293	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7512228	TTC4	cis	cerebellum	SCAN
rs7512228	GPX7	cis	parietal	SCAN
rs7512228	HSPB11	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56573400-56574600	Enhancers	Dnd41	blood
2	chr1:56574000-56574600	Enhancers	Fetal Thymus	thymus
3	chr1:56574200-56576600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links