Variant report

Variant	rs61772132
Chromosome Location	chr1:56522571-56522572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPAP2B-4	chr1:56522357-56522789	XLOC_000842

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489773	0.97[EUR][1000 genomes]
rs11206733	0.95[EUR][1000 genomes]
rs12077930	0.95[EUR][1000 genomes]
rs12080296	0.97[EUR][1000 genomes]
rs12117303	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123596	0.97[EUR][1000 genomes]
rs12132426	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12140284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12141880	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12408150	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12408597	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12410703	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1591010	0.93[EUR][1000 genomes]
rs4927300	0.93[EUR][1000 genomes]
rs4927301	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4927305	0.81[EUR][1000 genomes]
rs59536199	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61772134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61772138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61773369	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6588607	0.81[EUR][1000 genomes]
rs6682819	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6695004	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7512228	0.97[EUR][1000 genomes]
rs7543532	0.99[EUR][1000 genomes]
rs7544293	0.97[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56521400-56534600	Weak transcription	Psoas Muscle	Psoas
3	chr1:56521600-56524200	Enhancers	Fetal Lung	lung
4	chr1:56521600-56524400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56522000-56522800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:56522000-56522800	Enhancers	HSMMtube	muscle
7	chr1:56522000-56522800	Enhancers	Osteobl	bone
8	chr1:56522000-56523000	Enhancers	HSMM	muscle
9	chr1:56522000-56523600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:56522000-56524000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56522000-56524000	Enhancers	NHDF-Ad	bronchial
12	chr1:56522000-56524200	Enhancers	Adipose Nuclei	Adipose
13	chr1:56522000-56524400	Enhancers	Fetal Stomach	stomach
14	chr1:56522200-56522800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56522200-56522800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:56522200-56522800	Enhancers	Hela-S3	cervix
17	chr1:56522200-56522800	Enhancers	NH-A	brain
18	chr1:56522200-56522800	Enhancers	NHLF	lung
19	chr1:56522200-56523000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:56522200-56523200	Weak transcription	Aorta	Aorta
21	chr1:56522200-56523600	Enhancers	Placenta	Placenta
22	chr1:56522200-56524400	Enhancers	Fetal Muscle Leg	muscle
23	chr1:56522400-56522600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:56522400-56522600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:56522400-56522800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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