Variant report

Variant	rs12132426
Chromosome Location	chr1:56603201-56603202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489773	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206733	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12072872	0.87[ASN][1000 genomes]
rs12072883	0.87[ASN][1000 genomes]
rs12077930	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12080296	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12117195	0.83[EUR][1000 genomes]
rs12117303	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12123596	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12140284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12141880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408150	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408597	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12410703	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591010	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927300	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927301	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927305	0.82[EUR][1000 genomes]
rs4927306	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59536199	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772132	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61772134	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772138	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61773369	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6588607	0.82[EUR][1000 genomes]
rs6682819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6695004	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512228	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7526008	0.87[ASN][1000 genomes]
rs7543532	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7544293	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56598600-56603800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:56600600-56604400	Enhancers	Hela-S3	cervix
3	chr1:56600600-56604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56601200-56604600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
6	chr1:56602200-56604000	Weak transcription	NHDF-Ad	bronchial
7	chr1:56602600-56603600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:56602600-56603800	Enhancers	HSMMtube	muscle
9	chr1:56602600-56604000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:56602600-56604200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56602800-56604400	Enhancers	HUVEC	blood vessel
12	chr1:56602800-56604400	Enhancers	Osteobl	bone
13	chr1:56602800-56605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:56603000-56603400	Enhancers	Colon Smooth Muscle	Colon
15	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
17	chr1:56603200-56604000	Enhancers	NH-A	brain
18	chr1:56603200-56604000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links