Variant report

Variant	rs12077930
Chromosome Location	chr1:56528300-56528301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489773	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11206699	0.89[ASN][1000 genomes]
rs11206703	0.85[ASN][1000 genomes]
rs11206704	0.89[ASN][1000 genomes]
rs11206709	0.89[ASN][1000 genomes]
rs11206710	0.89[ASN][1000 genomes]
rs11206711	0.89[ASN][1000 genomes]
rs11206730	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11206733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206737	0.81[EUR][1000 genomes]
rs12072872	1.00[ASN][1000 genomes]
rs12072883	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12074486	0.89[ASN][1000 genomes]
rs12075636	0.89[ASN][1000 genomes]
rs12080296	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12117303	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123596	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12132426	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12140284	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12141880	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12408150	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12408597	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12410703	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1591010	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927288	0.85[ASN][1000 genomes]
rs4927300	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927301	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59536199	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59749317	0.89[ASN][1000 genomes]
rs61210945	0.89[ASN][1000 genomes]
rs61772132	0.95[EUR][1000 genomes]
rs61772134	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61772138	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61773369	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6668403	0.89[ASN][1000 genomes]
rs6682819	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695004	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7512228	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7515479	0.89[ASN][1000 genomes]
rs7526008	1.00[ASN][1000 genomes]
rs7543532	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7544293	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56521400-56534600	Weak transcription	Psoas Muscle	Psoas
3	chr1:56522800-56529200	Weak transcription	HSMMtube	muscle
4	chr1:56522800-56529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:56522800-56529800	Weak transcription	Osteobl	bone
6	chr1:56523000-56529200	Weak transcription	HSMM	muscle
7	chr1:56525600-56530400	Enhancers	Placenta	Placenta
8	chr1:56526000-56531200	Weak transcription	Ovary	ovary
9	chr1:56526200-56532000	Weak transcription	Aorta	Aorta
10	chr1:56526600-56529800	Weak transcription	Esophagus	oesophagus
11	chr1:56526800-56529200	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:56526800-56529200	Weak transcription	NHDF-Ad	bronchial
13	chr1:56526800-56529200	Weak transcription	NHLF	lung
14	chr1:56526800-56529800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:56526800-56533800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:56527000-56529800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:56527200-56530600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:56527400-56528400	Enhancers	Fetal Stomach	stomach
19	chr1:56527400-56528600	Enhancers	NHEK	skin
20	chr1:56527600-56531800	Enhancers	HMEC	breast
21	chr1:56527800-56528600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:56527800-56529000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:56527800-56529600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:56528000-56529000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:56528000-56529800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:56528000-56531800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:56528200-56528600	Enhancers	Right Atrium	heart
28	chr1:56528200-56529600	Enhancers	Adipose Nuclei	Adipose
29	chr1:56528200-56530200	Enhancers	Brain Hippocampus Middle	brain
30	chr1:56528200-56530600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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