Variant report

Variant	rs7526008
Chromosome Location	chr1:56491390-56491391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489773	0.91[ASN][1000 genomes]
rs11206699	0.89[ASN][1000 genomes]
rs11206703	0.85[ASN][1000 genomes]
rs11206704	0.89[ASN][1000 genomes]
rs11206709	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206710	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206711	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206733	0.96[ASN][1000 genomes]
rs12072872	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072883	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074486	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12075636	0.89[ASN][1000 genomes]
rs12077930	1.00[ASN][1000 genomes]
rs12080296	0.91[ASN][1000 genomes]
rs12117303	0.96[ASN][1000 genomes]
rs12123596	0.91[ASN][1000 genomes]
rs12132426	0.87[ASN][1000 genomes]
rs12140284	0.85[ASN][1000 genomes]
rs12141880	0.87[ASN][1000 genomes]
rs12408150	0.87[ASN][1000 genomes]
rs12408597	0.83[ASN][1000 genomes]
rs12410703	0.80[ASN][1000 genomes]
rs1591010	0.91[ASN][1000 genomes]
rs4927288	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4927300	0.96[ASN][1000 genomes]
rs4927301	0.96[ASN][1000 genomes]
rs59536199	0.96[ASN][1000 genomes]
rs59749317	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61210945	0.89[ASN][1000 genomes]
rs61772134	0.96[ASN][1000 genomes]
rs61772138	0.96[ASN][1000 genomes]
rs61773369	0.83[ASN][1000 genomes]
rs6668403	0.89[ASN][1000 genomes]
rs6682819	0.83[ASN][1000 genomes]
rs6695004	0.87[ASN][1000 genomes]
rs7512228	0.96[ASN][1000 genomes]
rs7515479	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7543532	0.91[ASN][1000 genomes]
rs7544293	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56501800	Weak transcription	Aorta	Aorta
2	chr1:56489400-56492200	Enhancers	Placenta	Placenta
3	chr1:56490000-56491600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:56490400-56491400	Weak transcription	NHEK	skin
5	chr1:56491000-56495000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links