Variant report

Variant	rs12141880
Chromosome Location	chr1:56605274-56605275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489773	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206733	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12072872	0.87[ASN][1000 genomes]
rs12072883	0.87[ASN][1000 genomes]
rs12077930	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12080296	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12117195	0.83[EUR][1000 genomes]
rs12117303	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12123596	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12132426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12408150	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408597	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12410703	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591010	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927300	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927301	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927305	0.82[EUR][1000 genomes]
rs4927306	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59536199	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772132	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61772134	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772138	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61773369	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6588607	0.82[EUR][1000 genomes]
rs6682819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6695004	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512228	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7526008	0.87[ASN][1000 genomes]
rs7543532	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7544293	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
2	chr1:56602800-56605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
5	chr1:56604200-56607800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
7	chr1:56604800-56606400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links