Variant report

Variant	rs12408597
Chromosome Location	chr1:56614051-56614052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489773	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11206733	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12072872	0.83[ASN][1000 genomes]
rs12072883	0.83[ASN][1000 genomes]
rs12077930	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12080296	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12117195	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12117303	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12123596	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12132426	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12140284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12141880	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12408150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12410703	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1591010	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927300	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4927301	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4927305	0.81[EUR][1000 genomes]
rs4927306	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59536199	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61772132	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61772134	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61772138	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61773369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588607	0.81[EUR][1000 genomes]
rs6682819	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6695004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7512228	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7526008	0.83[ASN][1000 genomes]
rs7543532	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7544293	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56612600-56615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:56612600-56616000	Weak transcription	Psoas Muscle	Psoas
5	chr1:56612800-56616400	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
7	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
8	chr1:56613000-56616000	Weak transcription	Adipose Nuclei	Adipose
9	chr1:56613400-56615200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:56613600-56615000	Weak transcription	NHDF-Ad	bronchial
11	chr1:56613600-56615200	Enhancers	HUVEC	blood vessel
12	chr1:56613600-56615400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:56613800-56614400	Weak transcription	Fetal Intestine Small	intestine
14	chr1:56613800-56616400	Weak transcription	Fetal Stomach	stomach
15	chr1:56614000-56616600	Weak transcription	Fetal Intestine Large	intestine

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