Variant report

Variant	rs61772138
Chromosome Location	chr1:56556607-56556608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489773	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206699	0.85[ASN][1000 genomes]
rs11206703	0.81[ASN][1000 genomes]
rs11206704	0.85[ASN][1000 genomes]
rs11206709	0.85[ASN][1000 genomes]
rs11206710	0.85[ASN][1000 genomes]
rs11206711	0.85[ASN][1000 genomes]
rs11206733	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072872	0.96[ASN][1000 genomes]
rs12072883	0.96[ASN][1000 genomes]
rs12074486	0.85[ASN][1000 genomes]
rs12075636	0.85[ASN][1000 genomes]
rs12077930	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12080296	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12117303	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123596	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12132426	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12140284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12141880	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408150	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408597	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12410703	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1591010	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927288	0.81[ASN][1000 genomes]
rs4927300	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927301	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927305	0.81[EUR][1000 genomes]
rs59536199	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59749317	0.85[ASN][1000 genomes]
rs61210945	0.85[ASN][1000 genomes]
rs61772132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61772134	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773369	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6588607	0.81[EUR][1000 genomes]
rs6668403	0.85[ASN][1000 genomes]
rs6682819	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6695004	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7512228	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515479	0.85[ASN][1000 genomes]
rs7526008	0.96[ASN][1000 genomes]
rs7543532	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7544293	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56556200-56558600	Weak transcription	Fetal Thymus	thymus

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