Variant report

Variant	rs7543532
Chromosome Location	chr1:56577257-56577258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10489773	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206699	0.80[ASN][1000 genomes]
rs11206704	0.80[ASN][1000 genomes]
rs11206709	0.80[ASN][1000 genomes]
rs11206710	0.80[ASN][1000 genomes]
rs11206711	0.80[ASN][1000 genomes]
rs11206733	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12072872	0.91[ASN][1000 genomes]
rs12072883	0.91[ASN][1000 genomes]
rs12074486	0.80[ASN][1000 genomes]
rs12075636	0.80[ASN][1000 genomes]
rs12077930	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12080296	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117195	0.81[EUR][1000 genomes]
rs12117303	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12123596	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132426	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12140284	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12141880	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12408150	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12408597	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12410703	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1591010	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927300	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927301	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4927305	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59536199	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59749317	0.80[ASN][1000 genomes]
rs61210945	0.80[ASN][1000 genomes]
rs61772132	0.99[EUR][1000 genomes]
rs61772134	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61772138	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61773369	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6588607	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6657024	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6668403	0.80[ASN][1000 genomes]
rs6680237	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6682819	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6695004	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6697082	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7512228	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7515479	0.80[ASN][1000 genomes]
rs7526008	0.91[ASN][1000 genomes]
rs7544293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7543532	GPX7	cis	parietal	SCAN
rs7543532	TTC4	cis	cerebellum	SCAN
rs7543532	HSPB11	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56575200-56578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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